Supplementary Information. Parameter values of each segment for MCMC phylogenetic analysis.
HA
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.095020 0.386495 0.044186 0.032415 0.402431 0.039453
Nucleotide frequencies: A=0.308813 C=0.206636 G=0.209820 T=0.274731
Among site rates: 1st position=0.430885 2nd position=0.289711 3rd position=2.279404
M
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.071917 0.405091 0.035407 0.011031 0.446238 0.030316
Nucleotide frequencies: A=0.317634 C=0.188024 G=0.281314 T=0.213028
Among site rates: 1st position=0.231092 2nd position=0.128235 3rd position=2.640674
NA
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.086302 0.403849 0.038092 0.031448 0.402921 0.037389
Nucleotide frequencies: A=0.305587 C=0.207009 G=0.214727 T=0.272677
Among site rates: 1st position=0.415096 2nd position=0.271994 3rd position=2.312911
NP
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.061739 0.380992 0.040553 0.008337 0.480202 0.028177
Nucleotide frequencies: A=0.329376 C=0.200851 G=0.250785 T=0.218988
Among site rates: 1st position=0.238205 2nd position=0.107411 3rdposition=2.654384
NS
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.085436 0.369406 0.039046 0.017917 0.45161 0.036585
Nucleotide frequencies: A=0.344794 C=0.172993 G=0.245349 T=0.236864
Among site rates: 1st position=0.664188 2nd position=0.364234 3rd position=1.971578
PA
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.056426 0.394922 0.024101 0.005928 0.490545 0.028078
Nucleotide frequencies: A=0.32513 C=0.197694 G=0.241389 T=0.235787
Among site rates: 1st position=0.282766 2nd position=0.121805 3rd position=2.595429
PB1
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.046727 0.388934 0.023363 0.004626 0.509602 0.026748
Nucleotide frequencies: A=0.318226 C=0.209198 G=0.238192 T=0.234383
Among site rates: 1st position=0.227496 2nd position=0.104655 3rd position=2.667849
PB2
Rate matrix (A-C, A-G, A-T, C-G, C-T, G-T)
0.051345 0.350326 0.022916 0.006159 0.540647 0.028608
Nucleotide frequencies: A=0.346597 C=0.188611 G=0.243958 T=0.220834
Among site rates: 1st position=0.285579 2nd position=0.101938 3rd position=2.612483