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Large Scale Sequence Analysis of Avian Influenza Isolates

Table 01. Project Summary.

All 11 transcripts from the 8 gene segments of AIV are listed along with their lengths in nucleotides (nt), the number of complete gene sequences produced in this study, and the total number of finished nucleotides by segment. The non-synonymous/synonymous substitution rate ratio (dN/dS), transition/transversion rate ratio (ts/tv), variability of each segment expressed as a percentage of total (Variability), and the number of amino acid variations per position in avian vs. non-avian hosts are also shown.

Segment Length
(nt)
Segments
Completed
(nt)
Finished
Sequence (nt)
dN/dS ts/tv Variability
(%)
Variants/Position
Avian Non-avian              
PB1 2341 284 664,844 0.03 8.0 4 1.52 1.52
PB1-F2       9.36 33.3   3.54 2.45
PB2 2341 272 636,752 0.03 7.9 4 1.67 1.66
PA 2233 272 607,376 0.04 7.3 4 1.74 1.70
HA 1770 219 387,630 0.14 2.7 32 5.52 4.42
NP 1565 292 456,980 0.03 6.9 4 1.81 1.85
NA 1450 259 375,550 0.14 3.5 31 5.09 4.38
M 1027 298 306,046 0.03 8.1 4 1.84 1.77
M2       0.39 12.5 5 3.50 3.42
NS 890 300 267,000 0.16 5.5 7 3.40 2.89
NS2       0.12 5.9 5 2.81 2.68
Total 13617 2196 3,702,178