The following tables contain a listing of the top 100 probe sets for each diagnostic subtypes ranked by their chi-square value
(Tables S3-S8). Each table contains the Affymetrix U133 series probe set number, a gene description, gene symbol, chromosomal location, and primary GenBank reference. Chi-square values were calculated utilizing only the samples in the training set in a differential diagnosis decision tree format as discussed in the text and illustrated in Figure 2 (Tables S3-S8) or by a parallel approach (Tables S9-S14). The calculation of the fold change was done in a parallel format using the total data set and comparing the mean signal value in the class versus the mean signal value in the non-class. The last column indicates whether this gene had previously been identified as a class discriminator using the U95Av2 data (old) or identified as a class discriminator only using the U133 data (new) (Tables S3-S8).
| U133 probe set | Gene description | Symbol | Location | GenBank Reference | Chi-square value | E2A PBX1 above/below mean | Fold change | old or new | |
| 1 | 201579_at | FAT tumor suppressor homolog 1 (Drosophila) | FAT | 4q34-q35 | NM_005245.1 | 88.0 | Above | 9.9 | old |
| 2 | 201695_s_at | nucleoside phosphorylase | NP | 14q13.1 | NM_000270.1 | 88.0 | Above | 3.8 | old |
| 3 | 204674_at | lymphoid-restricted membrane protein | LRMP | 12p12.3 | NM_006152.1 | 88.0 | Above | 5.8 | old |
| 4 | 205253_at | pre-B-cell leukemia transcription factor 1 | PBX1 | 1q23 | NM_002585.1 | 88.0 | Above | 3549.2 | old |
| 5 | 212148_at | pre-B-cell leukemia transcription factor 1, splice variant | PBX1 | 1q23 | BF967998 | 88.0 | Above | 5283.5 | old |
| 6 | 212151_at | pre-B-cell leukemia transcription factor 1, splice variant | PBX1 | 1q23 | BF967998 | 88.0 | Above | 7472.2 | old |
| 7 | 212371_at | DKFZp586C1019 | DKFZp586C1019 | 1 | AL049397.1 | 88.0 | Above | 2.5 | old |
| 8 | 219155_at | retinal degeneration B beta | RDGBB | 17q24.2 | NM_012417.1 | 88.0 | Above | 2.7 | new |
| 9 | 225483_at | hypothetical protein MGC10485 | MGC10485 | 11q25 | AI971602 | 88.0 | Above | 7.7 | new |
| 10 | 227439_at | E2a-Pbx1-associated protein | EB-1 | 12 | AW005572 | 88.0 | Above | 269.8 | new |
| 11 | 227949_at | Q9H4T4 like | H17739 | 20q13.32 | AL357503 | 88.0 | Above | 59.3 | new |
| 12 | 230306_at | hypothetical protein MGC10485 | MGC10485 | 11q25 | AA514326 | 88.0 | Above | 19.2 | new |
| 13 | 231095_at | retinal degeneration B beta | RDGBB | 17q24.2 | AW193811 | 88.0 | Above | 25.6 | new |
| 14 | 203372_s_at | STAT induced STAT inhibitor-2 | SOCS2 | 12q | AB004903.1 | 80.6 | Below | 23.4 | old |
| 15 | 206028_s_at | c-mer proto-oncogene tyrosine kinase | MERTK | 2q14.1 | NM_006343.1 | 80.6 | Above | 23.7 | old |
| 16 | 206181_at | signaling lymphocytic activation molecule | SLAM | 1q22-q23 | NM_003037.1 | 80.6 | Above | 6.3 | old |
| 17 | 208788_at | homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2 | HELO1 | 6p21.1-p12.1 | AL136939.1 | 80.6 | Above | 2.2 | old |
| 18 | 209760_at | KIAA0922 protein | KIAA0922 | 4q31.23 | AL136932.1 | 80.6 | Above | 2.9 | old |
| 19 | 35974_at | lymphoid-restricted membrane protein | LRMP | 12p12.3 | U10485 | 80.6 | Above | 6.2 | old |
| 20 | 38340_at | huntingtin interacting protein 12 | HIP12 | 12q24 | AB014555 | 80.6 | Above | 3.8 | old |
| 21 | 208644_at | ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) | ADPRT | 1q41-q42 | M32721.1 | 80.2 | Above | 3.0 | old |
| 22 | 212789_at | KIAA0056 protein | KIAA0056 | 11q25 | AI796581 | 80.2 | Above | 3.9 | old |
| 23 | 221113_s_at | wingless-type MMTV integration site family, member 16 | WNT16 | 7q31 | NM_016087.1 | 80.2 | Above | 2547.6 | new |
| 24 | 224022_x_at | wingless-type MMTV integration site family, member 16 | WNT16 | 7q31 | AF169963.1 | 80.2 | Above | 569.1 | new |
| 25 | 231040_at | EST | 9 | AW512988 | 80.2 | Above | 16.4 | new | |
| 26 | 232289_at | FLJ14167 | FLJ14167 | 17 | BF237871 | 80.2 | Above | 144.1 | new |
| 27 | 235666_at | EST | FLJ20489 | 10 | AA903473 | 80.2 | Above | 654.6 | new |
| 28 | 203373_at | STAT induced STAT inhibitor-2 | SOCS2 | 12q | NM_003877.1 | 74.2 | Below | 24.8 | old |
| 29 | 210785_s_at | basement membrane-induced gene | ICB-1 | 1p35.3 | AB035482.1 | 74.2 | Below | 4.1 | old |
| 30 | 224733_at | chemokine-like factor super family 3 | CKLFSF3 | 16q23.1 | AL574900 | 74.2 | Below | 41.7 | new |
| 31 | 225235_at | hypothetical protein MGC14859 | MGC14859 | 5q35.3 | AW007710 | 74.2 | Above | 3.6 | new |
| 32 | 204114_at | nidogen 2 (osteonidogen) | NID2 | 14q21-q22 | NM_007361.1 | 73.1 | Above | 15.1 | old |
| 33 | 211913_s_at | c-mer proto-oncogene tyrosine kinase | MERTK | 2q14.1 | L08961.1 | 72.8 | Above | 37.7 | old |
| 34 | 219551_at | uncharacterized bone marrow protein BM040 | BM040 | 3q21.1 | NM_018456.1 | 72.8 | Above | 3.0 | New |
| 35 | 223693_s_at | hypothetical protein FLJ10324 | FLJ10324 | 7p22 | AL136731.1 | 72.8 | Above | 65.6 | New |
| 36 | 200600_at | moesin | MSN | Xq11.2-q12 | NM_002444.1 | 72.5 | Below | 2.2 | Old |
| 37 | 213909_at | FLJ12280 | FLJ12280 | 3 | AU147799 | 72.5 | Above | 12.5 | New |
| 38 | 221669_s_at | acyl-Coenzyme A dehydrogenase family, member 8 | ACAD8 | 11q25 | BC001964.1 | 72.5 | Above | 2.6 | New |
| 39 | 235911_at | ESTs, Weakly similar to PIHUB6 salivary proline-rich protein precursor PRB1 (large allele) | 3 | AI885815 | 72.5 | Above | 36.6 | New | |
| 40 | 243533_x_at | ESTs | H09663 | 72.5 | Above | 23.2 | New | ||
| 41 | 202615_at | DKFZp686D0521 | DKFZp686D0521 | 9 | BF222895 | 68.6 | Below | 6.2 | Old |
| 42 | 204774_at | ecotropic viral integration site 2A | EVI2A | 17q11.2 | NM_014210.1 | 68.6 | Below | 3.0 | New |
| 43 | 218283_at | synovial sarcoma translocation gene on chromosome 18-like 2 | SS18L2 | 3p21 | NM_016305.1 | 68.6 | Above | 1.6 | New |
| 44 | 209130_at | synaptosomal-associated protein, 23kDa | SNAP23 | 15q14 | BC003686.1 | 67.8 | Below | 1.9 | New |
| 45 | 228580_at | serine protease HTRA3 | HTRA3 | 4p16.1 | AI828007 | 66.6 | Above | 3.8 | New |
| 46 | 202796_at | synaptopodin | KIAA1029 | 5q33.1 | NM_007286.1 | 66.5 | Above | 52.3 | Old |
| 47 | 218640_s_at | phafin 2 | FLJ13187 | 8q21.3 | NM_024613.1 | 66.5 | Above | 3.1 | New |
| 48 | 235099_at | ESTs, Weakly similar to PLLP_HUMAN Plasmolipin [H.sapiens] | 3 | AW080832 | 66.5 | Above | 6.7 | New | |
| 49 | 201889_at | family with sequence similarity 3, member C | FAM3C | 7q22.1-q31.1 | NM_014888.1 | 65.3 | Above | 4.6 | New |
| 50 | 202106_at | golgi autoantigen, golgin subfamily a, 3 | GOLGA3 | 12q24.33 | NM_005895.1 | 65.3 | Above | 3.3 | Old |
| 51 | 202208_s_at | ADP-ribosylation factor-like 7 | ARL7 | 2q37.2 | BC001051.1 | 65.3 | Above | 3.2 | Old |
| 52 | 205173_x_at | CD58 antigen, (lymphocyte function-associated antigen 3) | CD58 | 1p13 | NM_001779.1 | 65.3 | Above | 2.4 | Old |
| 53 | 211744_s_at | CD58 antigen, (lymphocyte function-associated antigen 3) | CD58 | 1p13 | BC005930.1 | 65.3 | Above | 2.5 | Old |
| 54 | 212552_at | hippocalcin-like 1 | HPCAL1 | 2p25.1 | BE617588 | 65.3 | Below | 2.6 | Old |
| 55 | 213358_at | KIAA0802 protein | KIAA0802 | 18p11.21 | AB018345.1 | 65.3 | Above | 12.7 | Old |
| 56 | 222699_s_at | phafin 2 | FLJ13187 | 8q21.3 | BF439250 | 65.3 | Above | 3.5 | New |
| 57 | 225618_at | EST | 17 | AI769587 | 65.3 | Below | 5.3 | New | |
| 58 | 238778_at | DKFZp451L157 | DKFZp451L157 | 10 | AI244661 | 65.3 | Above | 23.5 | New |
| 59 | 239427_at | ESTs | 1 | AA131524 | 65.3 | Above | 13.7 | New | |
| 60 | 47069_at | Rho GTPase activating protein 8 | ARHGAP8 | 22q13.31 | AA533284 | 65.3 | Above | 3.3 | New |
| 61 | 205769_at | solute carrier family 27 (fatty acid transporter), member 2 | SLC27A2 | 15q21.2 | NM_003645.1 | 65.1 | Above | 56.0 | Old |
| 62 | 210786_s_at | Friend leukemia virus integration 1 | FLI1 | 11q24.1-q24.3 | M93255.1 | 65.1 | Above | 2.2 | Old |
| 63 | 212985_at | DKFZp434E033 | DKFZp434E033 | 4 | BF115739 | 65.1 | Above | 7.1 | New |
| 64 | 227441_s_at | E2a-Pbx1-associated protein | EB-1 | 12 | AW005572 | 65.1 | Above | 1139.4 | New |
| 65 | 234261_at | DKFZp761M10121 | DKFZp761M10121 | 12 | AL137313.1 | 65.1 | Above | 960.8 | New |
| 66 | 244565_at | ESTs | 10 | AI685824 | 65.1 | Above | 7.6 | New | |
| 67 | 202181_at | KIAA0247 gene product | KIAA0247 | 14q24.1 | NM_014734.1 | 63.7 | Above | 1.8 | Old |
| 68 | 202207_at | ADP-ribosylation factor-like 7 | ARL7 | 2q37.2 | NM_005737.2 | 63.7 | Above | 3.2 | Old |
| 69 | 207571_x_at | basement membrane-induced gene | ICB-1 | 1p35.3 | NM_004848.1 | 63.7 | Below | 4.4 | Old |
| 70 | 209558_s_at | huntingtin interacting protein 12 | HIP12 | 12q24 | AB013384.1 | 61.1 | Above | 23.8 | Old |
| 71 | 213005_s_at | KIAA0172 protein | KIAA0172 | 9p24.3 | D79994.1 | 61.1 | Above | 8.3 | Old |
| 72 | 236854_at | cDNA DKFZp667F0617 | DKFZp667F0617 | 20 | AA743694 | 61.1 | Above | 12.6 | New |
| 73 | 226233_at | tubulin-specific chaperone e | TBCE | 1q42.3 | BG112197 | 60.0 | Above | 2.6 | New |
| 74 | 203435_s_at | membrane metallo-endopeptidase (neutral endopeptidase, enkephalinase, CALLA, CD10) | MME | 3q25.1-q25.2 | NM_007287.1 | 59.9 | Below | 2.2 | Old |
| 75 | 202478_at | GS3955 protein | GS3955 | 2p25.1 | NM_021643.1 | 59.3 | Above | 4.0 | Old |
| 76 | 202479_s_at | GS3955 protein | GS3955 | 2p25.1 | BC002637.1 | 59.3 | Above | 3.3 | Old |
| 77 | 203999_at | synaptotagmin I | SYT1 | 12cen-q21 | NM_005639.1 | 59.3 | Above | 3.9 | Old |
| 78 | 212149_at | KIAA0143 protein | KIAA0143 | 8q24.12 | AA805651 | 59.3 | Below | 13.5 | New |
| 79 | 212873_at | minor histocompatibility antigen HA-1 | HA-1 | 19p13.3 | BE349017 | 59.3 | Below | 2.9 | Old |
| 80 | 218346_s_at | p53 regulated PA26 nuclear protein | PA26 | 6q21 | NM_014454.1 | 59.3 | Below | 4.7 | New |
| 81 | 224856_at | FK506 binding protein 5 | FKBP5 | 6p21.3-21.2 | AL122066.1 | 59.3 | Below | 5.5 | Old |
| 82 | 200811_at | cold inducible RNA binding protein | CIRBP | 19p13.3 | NM_001280.1 | 59.1 | Below | 5.8 | Old |
| 83 | 201722_s_at | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) | GALNT1 | 18q12.1 | NM_020474.2 | 59.1 | Below | 1.8 | New |
| 84 | 223711_s_at | HSPC144 protein | HSPC144 | 11q25 | AF182413.1 | 59.1 | Above | 2.0 | New |
| 85 | 233273_at | cDNA FLJ12010 fis | FLJ12010 | 1 | AU146834 | 59.1 | Above | 30.6 | New |
| 86 | 201460_at | mitogen-activated protein kinase-activated protein kinase 2 | MAPKAPK2 | 1q32 | AI141802 | 57.9 | Above | 2.1 | Old |
| 87 | 202421_at | immunoglobulin superfamily, member 3 | IGSF3 | 1p13 | AB007935.1 | 57.9 | Above | 4.4 | New |
| 88 | 217983_s_at | ribonuclease 6 precursor | RNASE6PL | 6q27 | NM_003730.2 | 57.9 | Below | 3.4 | New |
| 89 | 218087_s_at | sorbin and SH3 domain containing 1 | SORBS1 | 10q23.3-q24.1 | NM_015385.1 | 57.9 | Above | 25.1 | New |
| 90 | 218491_s_at | HSPC144 protein | HSPC144 | 11q25 | NM_014174.1 | 57.9 | Above | 1.4 | New |
| 91 | 201825_s_at | CGI-49 protein | LOC51097 | 1q44 | AL572542 | 57.8 | Above | 2.2 | Old |
| 92 | 202206_at | ADP-ribosylation factor-like 7 | ARL7 | 2q37.2 | NM_005737.2 | 57.8 | Above | 3.9 | Old |
| 93 | 218683_at | polypyrimidine tract binding protein 2 | PTBP2 | 1p22.11-p21.3 | NM_021190.1 | 57.8 | Above | 1.8 | New |
| 94 | 226590_at | cDNA clone EUROIMAGE 1517766 | 9 | AA031404 | 57.8 | Above | 3.1 | New | |
| 95 | 227440_at | E2a-Pbx1-associated protein | EB-1 | 12 | AW005572 | 57.8 | Above | 1168.9 | New |
| 96 | 229770_at | hypothetical protein FLJ31978 | FLJ31978 | 12q24.33 | AI041543 | 57.8 | Above | 51.8 | New |
| 97 | 40148_at | amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like) | APBB2 | 4p14 | U62325 | 57.8 | Above | 6.2 | Old |
| 98 | 212959_s_at | MGC4170 protein | MGC4170 | 12q23.1 | AK001821.1 | 57.2 | Below | 3.0 | New |
| 99 | 203143_s_at | KIAA0040 gene product | KIAA0040 | 1q24-25 | T79953 | 56.3 | Above | 2.4 | New |
| 100 | 209683_at | hypothetical protein DKFZp566A1524 | DKFZP566A1524 | 2p24.2 | AA243659 | 56.3 | Below | 10.0 | New |
| U133 probe set |
Gene description | Symbol | Location | GenBank Reference | Chi-square value | E2A PBX1 above/below mean |
Fold change | old or new | |
| 1 | 201579_at | FAT tumor suppressor homolog 1 (Drosophila) | FAT | 4q34-q35 | NM_005245.1 | 88.0 | Above | 9.9 | old |
| 2 | 201695_s_at | nucleoside phosphorylase | NP | 14q13.1 | NM_000270.1 | 88.0 | Above | 3.8 | old |
| 3 | 204674_at | lymphoid-restricted membrane protein | LRMP | 12p12.3 | NM_006152.1 | 88.0 | Above | 5.8 | old |
| 4 | 205253_at | pre-B-cell leukemia transcription factor 1 | PBX1 | 1q23 | NM_002585.1 | 88.0 | Above | 3549.2 | old |
| 5 | 212148_at | pre-B-cell leukemia transcription factor 1, splice variant | PBX1 | 1q23 | BF967998 | 88.0 | Above | 5283.5 | old |
| 6 | 212151_at | pre-B-cell leukemia transcription factor 1, splice variant | PBX1 | 1q23 | BF967998 | 88.0 | Above | 7472.2 | old |
| 7 | 212371_at | DKFZp586C1019 | DKFZp586C1019 | 1 | AL049397.1 | 88.0 | Above | 2.5 | old |
| 8 | 219155_at | retinal degeneration B beta | RDGBB | 17q24.2 | NM_012417.1 | 88.0 | Above | 2.7 | new |
| 9 | 225483_at | hypothetical protein MGC10485 | MGC10485 | 11q25 | AI971602 | 88.0 | Above | 7.7 | new |
| 10 | 227439_at | E2a-Pbx1-associated protein | EB-1 | 12 | AW005572 | 88.0 | Above | 269.8 | new |
| 11 | 227949_at | Q9H4T4 like | H17739 | 20q13.32 | AL357503 | 88.0 | Above | 59.3 | new |
| 12 | 230306_at | hypothetical protein MGC10485 | MGC10485 | 11q25 | AA514326 | 88.0 | Above | 19.2 | new |
| 13 | 231095_at | retinal degeneration B beta | RDGBB | 17q24.2 | AW193811 | 88.0 | Above | 25.6 | new |
| 14 | 203372_s_at | STAT induced STAT inhibitor-2 | SOCS2 | 12q | AB004903.1 | 80.6 | Below | 23.4 | old |
| 15 | 206028_s_at | c-mer proto-oncogene tyrosine kinase | MERTK | 2q14.1 | NM_006343.1 | 80.6 | Above | 23.7 | old |
| 16 | 206181_at | signaling lymphocytic activation molecule | SLAM | 1q22-q23 | NM_003037.1 | 80.6 | Above | 6.3 | old |
| 17 | 208788_at | homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2 | HELO1 | 6p21.1-p12.1 | AL136939.1 | 80.6 | Above | 2.2 | old |
| 18 | 209760_at | KIAA0922 protein | KIAA0922 | 4q31.23 | AL136932.1 | 80.6 | Above | 2.9 | old |
| 19 | 35974_at | lymphoid-restricted membrane protein | LRMP | 12p12.3 | U10485 | 80.6 | Above | 6.2 | old |
| 20 | 38340_at | huntingtin interacting protein 12 | HIP12 | 12q24 | AB014555 | 80.6 | Above | 3.8 | old |
| 21 | 208644_at | ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) | ADPRT | 1q41-q42 | M32721.1 | 80.2 | Above | 3.0 | old |
| 22 | 212789_at | KIAA0056 protein | KIAA0056 | 11q25 | AI796581 | 80.2 | Above | 3.9 | old |
| 23 | 221113_s_at | wingless-type MMTV integration site family, member 16 | WNT16 | 7q31 | NM_016087.1 | 80.2 | Above | 2547.6 | new |
| 24 | 224022_x_at | wingless-type MMTV integration site family, member 16 | WNT16 | 7q31 | AF169963.1 | 80.2 | Above | 569.1 | new |
| 25 | 231040_at | EST | 9 | AW512988 | 80.2 | Above | 16.4 | new | |
| 26 | 232289_at | FLJ14167 | FLJ14167 | 17 | BF237871 | 80.2 | Above | 144.1 | new |
| 27 | 235666_at | EST | FLJ20489 | 10 | AA903473 | 80.2 | Above | 654.6 | new |
| 28 | 203373_at | STAT induced STAT inhibitor-2 | SOCS2 | 12q | NM_003877.1 | 74.2 | Below | 24.8 | old |
| 29 | 210785_s_at | basement membrane-induced gene | ICB-1 | 1p35.3 | AB035482.1 | 74.2 | Below | 4.1 | old |
| 30 | 224733_at | chemokine-like factor super family 3 | CKLFSF3 | 16q23.1 | AL574900 | 74.2 | Below | 41.7 | new |
| 31 | 225235_at | hypothetical protein MGC14859 | MGC14859 | 5q35.3 | AW007710 | 74.2 | Above | 3.6 | new |
| 32 | 204114_at | nidogen 2 (osteonidogen) | NID2 | 14q21-q22 | NM_007361.1 | 73.1 | Above | 15.1 | old |
| 33 | 211913_s_at | c-mer proto-oncogene tyrosine kinase | MERTK | 2q14.1 | L08961.1 | 72.8 | Above | 37.7 | old |
| 34 | 219551_at | uncharacterized bone marrow protein BM040 | BM040 | 3q21.1 | NM_018456.1 | 72.8 | Above | 3.0 | New |
| 35 | 223693_s_at | hypothetical protein FLJ10324 | FLJ10324 | 7p22 | AL136731.1 | 72.8 | Above | 65.6 | New |
| 36 | 200600_at | moesin | MSN | Xq11.2-q12 | NM_002444.1 | 72.5 | Below | 2.2 | Old |
| 37 | 213909_at | FLJ12280 | FLJ12280 | 3 | AU147799 | 72.5 | Above | 12.5 | New |
| 38 | 221669_s_at | acyl-Coenzyme A dehydrogenase family, member 8 | ACAD8 | 11q25 | BC001964.1 | 72.5 | Above | 2.6 | New |
| 39 | 235911_at | ESTs, Weakly similar to PIHUB6 salivary proline-rich protein precursor PRB1 (large allele) | 3 | AI885815 | 72.5 | Above | 36.6 | New | |
| 40 | 243533_x_at | ESTs | H09663 | 72.5 | Above | 23.2 | New | ||
| 41 | 202615_at | DKFZp686D0521 | DKFZp686D0521 | 9 | BF222895 | 68.6 | Below | 6.2 | Old |
| 42 | 204774_at | ecotropic viral integration site 2A | EVI2A | 17q11.2 | NM_014210.1 | 68.6 | Below | 3.0 | New |
| 43 | 218283_at | synovial sarcoma translocation gene on chromosome 18-like 2 | SS18L2 | 3p21 | NM_016305.1 | 68.6 | Above | 1.6 | New |
| 44 | 209130_at | synaptosomal-associated protein, 23kDa | SNAP23 | 15q14 | BC003686.1 | 67.8 | Below | 1.9 | New |
| 45 | 228580_at | serine protease HTRA3 | HTRA3 | 4p16.1 | AI828007 | 66.6 | Above | 3.8 | New |
| 46 | 202796_at | synaptopodin | KIAA1029 | 5q33.1 | NM_007286.1 | 66.5 | Above | 52.3 | Old |
| 47 | 218640_s_at | phafin 2 | FLJ13187 | 8q21.3 | NM_024613.1 | 66.5 | Above | 3.1 | New |
| 48 | 235099_at | ESTs, Weakly similar to PLLP_HUMAN Plasmolipin [H.sapiens] | 3 | AW080832 | 66.5 | Above | 6.7 | New | |
| 49 | 201889_at | family with sequence similarity 3, member C | FAM3C | 7q22.1-q31.1 | NM_014888.1 | 65.3 | Above | 4.6 | New |
| 50 | 202106_at | golgi autoantigen, golgin subfamily a, 3 | GOLGA3 | 12q24.33 | NM_005895.1 | 65.3 | Above | 3.3 | Old |
| 51 | 202208_s_at | ADP-ribosylation factor-like 7 | ARL7 | 2q37.2 | BC001051.1 | 65.3 | Above | 3.2 | Old |
| 52 | 205173_x_at | CD58 antigen, (lymphocyte function-associated antigen 3) | CD58 | 1p13 | NM_001779.1 | 65.3 | Above | 2.4 | Old |
| 53 | 211744_s_at | CD58 antigen, (lymphocyte function-associated antigen 3) | CD58 | 1p13 | BC005930.1 | 65.3 | Above | 2.5 | Old |
| 54 | 212552_at | hippocalcin-like 1 | HPCAL1 | 2p25.1 | BE617588 | 65.3 | Below | 2.6 | Old |
| 55 | 213358_at | KIAA0802 protein | KIAA0802 | 18p11.21 | AB018345.1 | 65.3 | Above | 12.7 | Old |
| 56 | 222699_s_at | phafin 2 | FLJ13187 | 8q21.3 | BF439250 | 65.3 | Above | 3.5 | New |
| 57 | 225618_at | EST | 17 | AI769587 | 65.3 | Below | 5.3 | New | |
| 58 | 238778_at | DKFZp451L157 | DKFZp451L157 | 10 | AI244661 | 65.3 | Above | 23.5 | New |
| 59 | 239427_at | ESTs | 1 | AA131524 | 65.3 | Above | 13.7 | New | |
| 60 | 47069_at | Rho GTPase activating protein 8 | ARHGAP8 | 22q13.31 | AA533284 | 65.3 | Above | 3.3 | New |
| 61 | 205769_at | solute carrier family 27 (fatty acid transporter), member 2 | SLC27A2 | 15q21.2 | NM_003645.1 | 65.1 | Above | 56.0 | Old |
| 62 | 210786_s_at | Friend leukemia virus integration 1 | FLI1 | 11q24.1-q24.3 | M93255.1 | 65.1 | Above | 2.2 | Old |
| 63 | 212985_at | DKFZp434E033 | DKFZp434E033 | 4 | BF115739 | 65.1 | Above | 7.1 | New |
| 64 | 227441_s_at | E2a-Pbx1-associated protein | EB-1 | 12 | AW005572 | 65.1 | Above | 1139.4 | New |
| 65 | 234261_at | DKFZp761M10121 | DKFZp761M10121 | 12 | AL137313.1 | 65.1 | Above | 960.8 | New |
| 66 | 244565_at | ESTs | 10 | AI685824 | 65.1 | Above | 7.6 | New | |
| 67 | 202181_at | KIAA0247 gene product | KIAA0247 | 14q24.1 | NM_014734.1 | 63.7 | Above | 1.8 | Old |
| 68 | 202207_at | ADP-ribosylation factor-like 7 | ARL7 | 2q37.2 | NM_005737.2 | 63.7 | Above | 3.2 | Old |
| 69 | 207571_x_at | basement membrane-induced gene | ICB-1 | 1p35.3 | NM_004848.1 | 63.7 | Below | 4.4 | Old |
| 70 | 209558_s_at | huntingtin interacting protein 12 | HIP12 | 12q24 | AB013384.1 | 61.1 | Above | 23.8 | Old |
| 71 | 213005_s_at | KIAA0172 protein | KIAA0172 | 9p24.3 | D79994.1 | 61.1 | Above | 8.3 | Old |
| 72 | 236854_at | cDNA DKFZp667F0617 | DKFZp667F0617 | 20 | AA743694 | 61.1 | Above | 12.6 | New |
| 73 | 226233_at | tubulin-specific chaperone e | TBCE | 1q42.3 | BG112197 | 60.0 | Above | 2.6 | New |
| 74 | 203435_s_at | membrane metallo-endopeptidase (neutral endopeptidase, enkephalinase, CALLA, CD10) | MME | 3q25.1-q25.2 | NM_007287.1 | 59.9 | Below | 2.2 | Old |
| 75 | 202478_at | GS3955 protein | GS3955 | 2p25.1 | NM_021643.1 | 59.3 | Above | 4.0 | Old |
| 76 | 202479_s_at | GS3955 protein | GS3955 | 2p25.1 | BC002637.1 | 59.3 | Above | 3.3 | Old |
| 77 | 203999_at | synaptotagmin I | SYT1 | 12cen-q21 | NM_005639.1 | 59.3 | Above | 3.9 | Old |
| 78 | 212149_at | KIAA0143 protein | KIAA0143 | 8q24.12 | AA805651 | 59.3 | Below | 13.5 | New |
| 79 | 212873_at | minor histocompatibility antigen HA-1 | HA-1 | 19p13.3 | BE349017 | 59.3 | Below | 2.9 | Old |
| 80 | 218346_s_at | p53 regulated PA26 nuclear protein | PA26 | 6q21 | NM_014454.1 | 59.3 | Below | 4.7 | New |
| 81 | 224856_at | FK506 binding protein 5 | FKBP5 | 6p21.3-21.2 | AL122066.1 | 59.3 | Below | 5.5 | Old |
| 82 | 200811_at | cold inducible RNA binding protein | CIRBP | 19p13.3 | NM_001280.1 | 59.1 | Below | 5.8 | Old |
| 83 | 201722_s_at | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) | GALNT1 | 18q12.1 | NM_020474.2 | 59.1 | Below | 1.8 | New |
| 84 | 223711_s_at | HSPC144 protein | HSPC144 | 11q25 | AF182413.1 | 59.1 | Above | 2.0 | New |
| 85 | 233273_at | cDNA FLJ12010 fis | FLJ12010 | 1 | AU146834 | 59.1 | Above | 30.6 | New |
| 86 | 201460_at | mitogen-activated protein kinase-activated protein kinase 2 | MAPKAPK2 | 1q32 | AI141802 | 57.9 | Above | 2.1 | Old |
| 87 | 202421_at | immunoglobulin superfamily, member 3 | IGSF3 | 1p13 | AB007935.1 | 57.9 | Above | 4.4 | New |
| 88 | 217983_s_at | ribonuclease 6 precursor | RNASE6PL | 6q27 | NM_003730.2 | 57.9 | Below | 3.4 | New |
| 89 | 218087_s_at | sorbin and SH3 domain containing 1 | SORBS1 | 10q23.3-q24.1 | NM_015385.1 | 57.9 | Above | 25.1 | New |
| 90 | 218491_s_at | HSPC144 protein | HSPC144 | 11q25 | NM_014174.1 | 57.9 | Above | 1.4 | New |
| 91 | 201825_s_at | CGI-49 protein | LOC51097 | 1q44 | AL572542 | 57.8 | Above | 2.2 | Old |
| 92 | 202206_at | ADP-ribosylation factor-like 7 | ARL7 | 2q37.2 | NM_005737.2 | 57.8 | Above | 3.9 | Old |
| 93 | 218683_at | polypyrimidine tract binding protein 2 | PTBP2 | 1p22.11-p21.3 | NM_021190.1 | 57.8 | Above | 1.8 | New |
| 94 | 226590_at | cDNA clone EUROIMAGE 1517766 | 9 | AA031404 | 57.8 | Above | 3.1 | New | |
| 95 | 227440_at | E2a-Pbx1-associated protein | EB-1 | 12 | AW005572 | 57.8 | Above | 1168.9 | New |
| 96 | 229770_at | hypothetical protein FLJ31978 | FLJ31978 | 12q24.33 | AI041543 | 57.8 | Above | 51.8 | New |
| 97 | 40148_at | amyloid beta (A4) precursor protein-binding, family B, member 2 (Fe65-like) | APBB2 | 4p14 | U62325 | 57.8 | Above | 6.2 | Old |
| 98 | 212959_s_at | MGC4170 protein | MGC4170 | 12q23.1 | AK001821.1 | 57.2 | Below | 3.0 | New |
| 99 | 203143_s_at | KIAA0040 gene product | KIAA0040 | 1q24-25 | T79953 | 56.3 | Above | 2.4 | New |
| 100 | 209683_at | hypothetical protein DKFZp566A1524 | DKFZP566A1524 | 2p24.2 | AA243659 | 56.3 | Below | 10.0 | New |