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Supplementary Information

Classification of Pediatric Acute Lymphoblastic Leukemia by Gene Expression Profile

Table S11. Top 100 chi-square probe sets selected for Hyperdiploid >50 in parallel format

  U133 probe set Gene description Symbol Location GenBank Reference Unigene Reference Chi-square value HD>50
above/ below mean		 Fold change
1 216071_x_at trinucleotide repeat containing 11 TNRC11 Xq13 AF132033 Hs.211607 91.8 Above 1.8
2 218757_s_at similar to yeast Upf3, variant B UPF3B Xq25-q26 NM_023010.1 Hs.103832 91.3 Above 2.3
3 208861_s_at alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) ATRX Xq13.1-q21.1 U72937.2 Hs.96264 91.3 Above 1.7
4 200980_s_at pyruvate dehydrogenase (lipoamide) alpha 1 PDHA1 Xp22.2-p22.1 NM_000284.1 Hs.1023 83.1 Above 1.7
5 202371_at hypothetical protein FLJ21174 FLJ21174 Xq22.1 NM_024863.1 Hs.194329 83.1 Above 3.6
6 205324_s_at FtsJ homolog 1 (E. coli) FTSJ1 Xp11.23 NM_012280.1 Hs.23170 83.1 Above 2.2
7 201899_s_at ubiquitin-conjugating enzyme E2A (RAD6 homolog) UBE2A Xq24-q25 NM_003336.1 Hs.80612 82.7 Above 1.8
8 212846_at KIAA0179 protein KIAA0179 21q22.3 D80001.1 Hs.152629 82.7 Above 2.0
9 218499_at Mst3 and SOK1-related kinase MST4 Xq26.1 NM_016542.1 Hs.23643 82.7 Above 2.5
10 221689_s_at Down syndrome critical region gene 5 DSCR5 21q22.2 AB035745.1 Hs.66493 82.7 Above 2.2
11 219038_at hypothetical protein FLJ11565 FLJ11565 Xq22.2 NM_024657.1 Hs.61763 78.8 Above 6.8
12 208598_s_at Upstream regulatory element binding protein 1 UREB1 Xp11.22 NM_005703.2   78.4 Above 1.6
13 201100_s_at ubiquitin specific protease 9, X chromosome (fat facets-like Drosophila) USP9X Xp11.4 NM_004652.2 Hs.77578 76.1 Above 1.7
14 201132_at heterogeneous nuclear ribonucleoprotein H2 (H') HNRPH2 Xq22 NM_019597.1 Hs.278857 74.6 Above 2.0
15 201898_s_at ubiquitin-conjugating enzyme E2A (RAD6 homolog) UBE2A Xq24-q25 AI126625 Hs.80612 74.6 Above 1.6
16 213289_at Homo sapiens cDNA FLJ39590 fis, clone SKNMC1000079     BE221922 Hs.356269 74.6 Above 3.8
17 219485_s_at proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 PSMD10 Xq22.3 NM_002814.1 Hs.7756 74.6 Above 2.4
18 218878_s_at sirtuin silent mating type information regulation 2 homolog 1 (S. cerevisiae) SIRT1 10q22.2 NM_012238.3 Hs.31176 74.4 Above 1.4
19 228005_at ESTs, Weakly similar to T45117 hU1-70K protein (286 AA) [imported] - human (fragment) [H.sapiens]     BE677308 Hs.96716 74.4 Above 3.8
20 201136_at proteolipid protein 2 (colonic epithelium-enriched) PLP2 Xp11.23 NM_002668.1 Hs.77422 73.0 Above 3.4
21 202214_s_at cullin 4B CUL4B Xq23 NM_003588.1 Hs.155976 73.0 Above 1.9
22 242794_at ESTs     AI569476 Hs.177135 70.0 Above 3.2
23 211342_x_at trinucleotide repeat containing 11 (THR-associated protein, 230 kDa subunit) TNRC11 Xq13 BC004354.1   68.1 Above 1.8
24 212419_at Homo sapiens, similar to Y43E12A.2.p, clone MGC:33537 IMAGE:4821347, mRNA, complete cds     AL049949.1 Hs.28264 68.1 Above 13.0
25 207785_s_at H-2K binding factor-2 LOC51580 9 NM_015874.1 Hs.347340 67.8 Above 1.8
26 212460_at hypothetical protein MGC24447 MGC24447 14 BE738425 Hs.353161 67.8 Above 2.2
27 203745_at holocytochrome c synthase (cytochrome c heme-lyase) HCCS Xp22.3 AI801013 Hs.211571 67.8 Above 2.0
28 209565_at zinc finger protein 183 (RING finger, C3HC4 type) ZNF183 Xq25-q26 BC000832.1 Hs.64794 67.8 Above 2.2
29 201099_at ubiquitin specific protease 9, X chromosome (fat facets-like Drosophila) USP9X Xp11.4 AA824386 Hs.77578 66.3 Above 1.6
30 203974_at DNA segment, numerous copies, expressed probes (GS1 gene) DXF68S1E Xp22.32 NM_012080.1 Hs.78991 66.3 Above 4.0
31 215884_s_at ubiquilin 2 UBQLN2 Xp11.23-p11.1 AK001029.1 Hs.4552 66.2 Above 1.9
32 200642_at superoxide dismutase 1, soluble SOD1 21q22.11 NM_000454.1 Hs.75428 64.7 Above 2.3
33 200738_s_at phosphoglycerate kinase 1 PGK1 Xq13 NM_000291.1 Hs.78771 64.7 Above 1.8
34 201312_s_at SH3 domain binding glutamic acid-rich protein like SH3BGRL Xq13.3 NM_003022.1 Hs.14368 64.7 Above 1.6
35 226875_at hypothetical protein FLJ32122 FLJ32122 Xq24 AI742838 Hs.107513 64.6 Above 2.3
36 228057_at similar to Smhs1 protein LOC115265 4q22.1 AA528140 Hs.107515 63.7 Above 6.7
37 232974_at Homo sapiens cDNA FLJ12417 fis, clone MAMMA1003039     AU148256 Hs.226469 63.7 Above 3.1
38 232034_at Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763)     AL117607.1 Hs.175563 62.1 Above 6.1
39 200944_s_at high-mobility group nucleosome binding domain 1 HMGN1 21q22.2 NM_004965.1 Hs.251064 61.9 Above 1.7
40 201443_s_at ATPase, H+ transporting, lysosomal interacting protein 2 ATP6IP2 Xq21 AF248966.1 Hs.183434 61.9 Above 1.9
41 226333_at interleukin 6 receptor IL6R 1q21 AV700030 Hs.193400 61.9 Above 8.7
42 203585_at zinc finger protein 185 (LIM domain) ZNF185 Xq28 NM_007150.1 Hs.16622 60.9 Above 10.7
43 206846_s_at histone deacetylase 6 HDAC6 Xp11.23 NM_006044.2 Hs.6764 60.1 Above 1.5
44 216095_x_at myotubularin related protein 1 MTMR1 Xq28 AF057354.1 Hs.372428 60.1 Above 1.8
45 226039_at Mannosyl (alpha-1,3)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase MGAT4A 2q11.2 AW006441 Hs.24210 60.1 Above 3.0
46 227210_at Homo sapiens cDNA FLJ32568 fis, clone SPLEN2000098     T65020 Hs.12699 60.1 Above 3.6
47 236172_at ESTs     AW206817 Hs.158186 60.1 Above 2.4
48 214735_at phosphoinositide-binding protein PIP3-E PIP3-E 6q25.2 AW166711 Hs.185140 59.8 Above 6.4
49 206147_x_at sex comb on midleg-like 2 (Drosophila) SCML2 Xp22 NM_006089.1 Hs.171558 59.6 Above 2.2
50 209022_at stromal antigen 2 STAG2 Xq25 AK026678.1 Hs.8217 59.6 Above 1.7
51 213282_at Homo sapiens cDNA FLJ39590 fis, clone SKNMC1000079     BE221922 Hs.356269 59.6 Above 2.2
52 218582_at hypothetical protein FLJ20445 FLJ20445 10q23.33 NM_017824.1 Hs.343748 59.6 Above 1.6
53 218694_at ALEX1 protein ALEX1 Xq21.33-q22.2 NM_016608.1 Hs.9728 59.6 Above 2.8
54 226785_at Homo sapiens cDNA FLJ36516 fis, clone TRACH2001898     BF475862 Hs.88252 59.6 Above 1.9
55 200655_s_at calmodulin 1 (phosphorylase kinase, delta) CALM1 14q24-q31 NM_006888.1 Hs.177656 58.7 Above 1.7
56 210176_at toll-like receptor 1 TLR1 4p14 AL050262.1 Hs.2474 58.2 Above 2.1
57 202711_at ephrin-B1 EFNB1 Xq12 NM_004429.1 Hs.144700 58.2 Above 14.9
58 204446_s_at arachidonate 5-lipoxygenase ALOX5 10q11.2 NM_000698.1 Hs.89499 58.2 Above 4.2
59 219297_at similar to rab11-binding protein FLJ11116 Xq24 NM_019045.1 Hs.98510 58.2 Above 2.4
60 201923_at peroxiredoxin 4 PRDX4 Xp22.13 NM_006406.1 Hs.83383 58.2 Above 1.9
61 212929_s_at KIAA0592 protein KIAA0592 10q11.21 W68158 Hs.13273 58.2 Above 5.0
62 204045_at transcription elongation factor A (SII)-like 1 TCEAL1 Xq22.1 NM_004780.1 Hs.95243 56.8 Above 2.1
63 208117_s_at hypothetical protein FLJ12525 FLJ12525 Xq12-q13 NM_031206.1 Hs.321618 56.8 Above 2.2
64 209620_s_at ATP-binding cassette, sub-family B (MDR/TAP), member 7 ABCB7 Xq12-q13 AB005289.1 Hs.125856 56.8 Above 2.1
65 209679_s_at hypothetical protein from clone 643 LOC57228 12q11 BC003379.1 Hs.206501 56.8 Above 5.6
66 217954_s_at PHD finger protein 3 PHF3   NM_015153.1 Hs.78893 56.8 Above 1.5
67 218414_s_at LIS1-interacting protein NUDE1, rat homolog NUDE1 16p13.11 NM_017668.1 Hs.263925 56.8 Above 2.0
68 226037_s_at TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa TAF9L Xq13.1-q21.1 AL049589 Hs.171723 56.8 Above 1.9
69 227279_at hypothetical protein MGC15737 MGC15737 Xq22.1 AA847654 Hs.39122 56.8 Above 5.6
70 200600_at Moesin (membrane organizing extension spike protein) MSN Xq11.2-q12 NM_002444.1 Hs.170328 56.2 Above 1.9
71 200701_at Niemann-Pick disease, type C2 NPC2 14q24.3 NM_006432.1 Hs.119529 55.9 Above 1.7
72 200737_at phosphoglycerate kinase 1 PGK1 Xq13 NM_000291.1 Hs.78771 55.9 Above 1.8
73 201642_at interferon gamma receptor 2 (interferon gamma transducer 1) IFNGR2 21q22.11 NM_005534.1 Hs.177559 55.9 Above 2.5
74 214527_s_at polyglutamine binding protein 1 PQBP1 Xp11.23 AB041836.1 Hs.30570 55.9 Above 1.7
75 223082_at SH3-domain kinase binding protein 1 SH3KBP1 Xp22.1-p21.3 AF230904.1 Hs.153260 55.9 Above 2.0
76 225182_at Homo sapiens EST from clone 491476, full insert     AL355685.1 Hs.9042 55.9 Above 2.1
77 226760_at Homo sapiens cDNA FLJ32174 fis, clone PLACE6001064     BF666325 Hs.297007 55.9 Above 2.2
78 204572_s_at protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) PIN4 Xq13 NM_006223.1 Hs.11774 54.8 Above 2.9
79 201092_at retinoblastoma binding protein 7 RBBP7 Xp22.31 NM_002893.2 Hs.31314 54.0 Above 1.6
80 204690_at syntaxin 8 STX8 17p12 NM_004853.1 Hs.380938 54.0 Above 1.4
81 206016_at JM1 protein JM1 Xp11.23 NM_014008.1 Hs.26333 54.0 Above 2.3
82 218021_at peroxisomal short-chain alcohol dehydrogenase humNRDR 14q11.2 NM_021004.1 Hs.6318 54.0 Above 4.0
83 221808_at RAB9A, member RAS oncogene family RAB9A Xp22.2 NM_004251.1 Hs.330994 54.0 Above 1.8
84 223497_at KIAA1411 protein KIAA1411 6q12-q13 AL136820.1 Hs.107287 54.0 Above 3.8
85 226335_at Homo sapiens cDNA FLJ12807 fis, clone NT2RP2002316     BG498334 Hs.188361 54.0 Above 2.0
86 201311_s_at SH3 domain binding glutamic acid-rich protein like SH3BGRL Xq13.3 AL515318 Hs.14368 53.0 Above 1.6
87 202829_s_at synaptobrevin-like 1 SYBL1 Xq28 NM_005638.1 Hs.24167 53.0 Above 1.5
88 209370_s_at SH3-domain binding protein 2 SH3BP2 4p16.3 AB000462.1 Hs.167679 53.0 Above 3.2
89 46323_at Ca2+-dependent endoplasmic reticulum nucleoside diphosphatase SHAPY 17q25.3 AL120741 Hs.8859 52.3 Above 1.7
90 200658_s_at prohibitin PHB 17q21 AL560017 Hs.75323 52.3 Above 2.0
91 202974_at membrane protein, palmitoylated 1, 55kDa MPP1 Xq28 NM_002436.2 Hs.1861 52.3 Above 2.2
92 221188_s_at cell death-inducing DFFA-like effector b CIDEB 14q11.2 NM_014430.1 Hs.288835 52.3 Above 2.4
93 203776_at T54 protein T54 Xp11.23 NM_015698.1 Hs.100391 52.3 Above 2.0
94 211974_x_at CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344) CD59 11p13 AL513759 Hs.278573 52.3 Above 1.7
95 213000_at nuclear matrix protein NXP-2 NXP-2 21q22.13 AP000693 Hs.70359 52.3 Above 1.9
96 225361_x_at similar to hypothetical protein MGC17347 LOC159090 Xq26.2 AI341165 Hs.353200 52.3 Above 1.8
97 226905_at Homo sapiens, clone IMAGE:4564684, mRNA, partial cds     BG036514 Hs.345588 52.3 Above 4.0
98 223294_at hypothetical protein LOC51260 LOC51260 Xq13.1 BC001220.1 Hs.128764 52.3 Above 1.8
99 226810_at Homo sapiens mRNA; cDNA DKFZp761M0111 (from clone DKFZp761M0111)     BE500942 Hs.13299 52.2 Above 2.5
100 238469_at hypothetical protein FLJ21079 FLJ21079 6q14.1 BE620374 Hs.16512 51.8 Above 2.2

Table S12. Top 100 chi-square probe sets selected for MLL  in parallel format

  U133 probe set Gene description Symbol Location GenBank Reference Unigene Reference Chi-square value MLL above/below
mean		 Fold change
1 226939_at Homo sapiens cDNA FLJ37247 fis, clone BRAMY2006397     AI202327 Hs.44833 92.2 Above 7
2 219463_at chromosome 20 open reading frame 103 C20orf103 20p12 NM_012261.1 Hs.22920 86.2 Above 24
3 204069_at Meis1, myeloid ecotropic viral integration site 1 homolog MEIS1 2p14-p13 NM_002398.1 Hs.170177 84.9 Above 73
4 203837_at mitogen-activated protein kinase kinase kinase 5 MAP3K5 6q22.33 NM_005923.2 Hs.151988 77.3 Above 4
5 226415_at KIAA1576 protein KIAA1576 16q22.1 AA156723 Hs.22975 77.3 Above 40
6 222409_at coronin, actin binding protein, 1C CORO1C 12q24.1 AL162070.1 Hs.17377 71.1 Above 5
7 242172_at ESTs     N50406 Hs.191349 71.1 Above 33
8 235879_at ESTs     AI697540 Hs.310286 70.0 Above 4
9 231899_at KIAA1726 protein KIAA1726 11q23.1 AB051513.1 Hs.164719 65.6 Above 33
10 212386_at Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272     AK021980.1 Hs.289068 64.5 Below 3
11 201153_s_at muscleblind-like (Drosophila) MBNL 3q25 NM_021038.1 Hs.28578 63.4 Above 2
12 218217_at likely homolog of rat and mouse retinoid-inducible serine carboxypeptidase RISC 17q23.2 NM_021626.1 Hs.106747 63.4 Above 3
13 201875_s_at hypothetical protein FLJ21047 FLJ21047 1q23.2 NM_024569.1 Hs.14891 63.0 Above 2
14 205717_x_at protocadherin gamma subfamily C, 3 PCDHGC3 5q31 NM_002588.1 Hs.284180 63.0 Above 5
15 205821_at DNA segment on chromosome 12 (unique) 2489 expressed sequence D12S2489E 12p13.2-p12.3 NM_007360.1 Hs.74085 63.0 Above 9
16 205899_at cyclin A1 CCNA1 13q12.3-q13 NM_003914.1 Hs.79378 63.0 Above 104
17 209079_x_at protocadherin gamma subfamily A, 1 PCDHGA1 5q31 AF152318.1 Hs.333404 63.0 Above 5
18 210660_at leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1 LILRA1 19q13.4 AF025529.1 Hs.166156 63.0 Above 532
19 211066_x_at protocadherin gamma subfamily C, 3 PCDHGC3 5q31 BC006439.1 Hs.284180 63.0 Above 5
20 215836_s_at protocadherin gamma subfamily B, 7 PCDHGB7 5q31 AK026188.1 Hs.256783 63.0 Above 4
21 212135_s_at calcium transporting ATPase plasma membrane  protein. ATP2B4   AW517686 Hs.356388 62.6 Below 2
22 226668_at hypothetical protein FLJ36175 FLJ36175   W80623 Hs.20848 62.4 Above 2
23 201152_s_at muscleblind-like (Drosophila) MBNL 3q25 NM_021038.1 Hs.28578 60.7 Above 2
24 218847_at IGF-II mRNA-binding protein 2 IMP-2 3q28 NM_006548.1 Hs.30299 60.7 Above 23
25 238712_at ESTs     BF801735 Hs.181574 60.7 Above 3
26 234032_at       AF119847.1   60.1 Above 4
27 218764_at hypothetical protein MGC5363 MGC5363 14q22.1-q22.3 NM_024064.1 Hs.1880 59.3 Below 8
28 203345_s_at likely ortholog of mouse metal response element binding transcription factor 2 M96 1p22.1 AI566096 Hs.31016 58.5 Below 2
29 203836_s_at mitogen-activated protein kinase kinase kinase 5 MAP3K5 6q22.33 D84476.1 Hs.151988 58.5 Above 14
30 227999_at hypothetical protein BC011630 LOC170394 10q26.3 AI290476 Hs.157728 58.5 Above 17
31 235479_at ESTs, Moderately similar to  KIAA0940 protein [Homo sapiens] [H.sapiens]     AI948598 Hs.156469 58.5 Above 4
32 220643_s_at Fas apoptotic inhibitory molecule FAIM 3q23 NM_018147.1 Hs.173438 58.2 Above 3
33 201151_s_at muscleblind-like (Drosophila) MBNL 3q25 NM_021038.1 Hs.28578 56.8 Above 3
34 205668_at lymphocyte antigen 75 LY75 2q24 NM_002349.1 Hs.153563 56.8 Above 2
35 52164_at chromosome 11 open reading frame 24 C11orf24 11q13 AA065185 Hs.303025 56.4 Above 2
36 56256_at CGI-40 protein LOC51092 11q23.3 AA150165 Hs.33724 56.4 Above 2
37 228855_at nudix (nucleoside diphosphate linked moiety X)-type motif 7 NUDT7   AI927964 Hs.115920 56.4 Above 6
38 235173_at muscleblind-like (Drosophila) MBNL 3q25 AA093668 Hs.28578 56.0 Above 41
39 241391_at ESTs, Moderately similar to  hypothetical protein FLJ20378 [Homo sapiens] [H.sapiens]     AA654772 Hs.186564 56.0 Above 3
40 201105_at lectin, galactoside-binding, soluble, 1 (galectin 1) LGALS1 22q13.1 NM_002305.2 Hs.227751 55.9 Above 15
41 202975_s_at Rho-related BTB domain containing 3 RHOBTB3 5q21.2 N21138 Hs.10432 55.9 Above 6
42 236558_at ESTs     AA699809 Hs.189900 55.9 Above 18
43 225563_at Homo sapiens cDNA FLJ33988 fis, clone DFNES2006346, weakly similar to PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3 (EC 3.1.13.4)     AI970788 Hs.190153 55.7 Above 3
44 221286_s_at proapoptotic caspase adaptor protein FLJ32987 5q23-5q31 NM_016459.1 Hs.122492 54.1 Below 4
45 203375_s_at tripeptidyl peptidase II TPP2 13q32-q33 NM_003291.1 Hs.1117 52.9 Above 2
46 215000_s_at fasciculation and elongation protein zeta 2 (zygin II) FEZ2 2p21 AL117593.1 Hs.103419 52.9 Above 2
47 209191_at tubulin beta-5 TUBB-5   BC002654.1 Hs.274398 52.9 Above 6
48 225202_at Rho-related BTB domain containing 3 RHOBTB3 5q21.2 BE620739 Hs.10432 52.5 Above 6
49 225232_at phosphatidylinositol-3 phosphate 3-phosphatase adaptor subunit 3PAP 5p13.2 AA524700 Hs.93872 51.6 Above 2
50 227611_at hypothetical protein FLJ25005 FLJ25005 15q26.3 AA442856 Hs.181426 51.6 Above 3
51 212136_at calcium transporting ATPase plasma membrane  protein. ATP2B4   AW517686 Hs.356388 50.2 Below 2
52 215925_s_at CD72 antigen CD72 9p11.2 AF283777.2 Hs.116481 50.2 Above 3
53 221676_s_at coronin, actin binding protein, 1C CORO1C 12q24.1 BC002342.1 Hs.17377 50.2 Above 4
54 212660_at KIAA0239 protein KIAA0239 5q31.1 AI735639 Hs.9729 49.6 Below 2
55 234987_at SAM domain and HD domain 1 SAMHD1 20pter-q12 AV715309 Hs.23889 49.4 Above 4
56 205550_s_at brain and reproductive organ-expressed (TNFRSF1A modulator) BRE 2p23.3 NM_004899.1 Hs.80426 49.3 Above 2
57 210993_s_at MAD, mothers against decapentaplegic homolog 1 (Drosophila) MADH1 4q28 U54826.1 Hs.79067 49.3 Below 96
58 205078_at phosphatidylinositol glycan, class F PIGF 2p21-p16 NM_002643.1 Hs.348397 49.3 Above 2
59 212174_at adenylate kinase 2 AK2 1p34 AK023758.1 Hs.171811 49.3 Above 2
60 241681_at ESTs     AW296451 Hs.24605 49.3 Above 2
61 203820_s_at IGF-II mRNA-binding protein 3 KOC1 7p11 NM_006547.1 Hs.79440 49.0 Above 3
62 209168_at Homo sapiens cDNA FLJ38338 fis, clone FCBBF3027104, highly similar to Mus musculus proteolipid M6B isoform alpha-beta-TMD-omega (M6B) mRNA     AF016004.1 Hs.379090 49.0 Above 4
63 213566_at ribonuclease, RNase A family, k6 RNASE6 14q11.1 NM_005615.1 Hs.23262 49.0 Above 6
64 224622_at KIAA1322 protein KIAA1322 4p16.2 AB037743.1 Hs.72242 49.0 Above 2
65 236921_at ESTs     BE504716 Hs.372166 49.0 Above 3
66 239278_at ESTs, Weakly similar to JC5238 galactosylceramide-like protein, GCP - human [H.sapiens]     AI471969 Hs.182606 49.0 Above 3
67 226459_at Homo sapiens gastric cancer-related protein GCYS-20 (gcys-20) mRNA, complete cds     AW575754 Hs.86437 47.7 Above 2
68 239369_at Homo sapiens cDNA FLJ33328 fis, clone BRACE1000051, weakly similar to KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN     AW966156 Hs.323991 47.3 Above 5
69 218581_at hypothetical protein FLJ12816 FLJ12816 14q11.1 NM_022060.1 Hs.9175 47.1 Above 23
70 214651_s_at homeo box A9 HOXA9 7p15-p14 U41813.1 Hs.380229 47.1 Above 28
71 224933_s_at hypothetical protein DKFZp761F0118 DKFZp761F0118 10q22.1 AB037801.1 Hs.6685 47.1 Above 2
72 239393_at ESTs     AW510927 Hs.371883 46.5 Above 6
73 209112_at cyclin-dependent kinase inhibitor 1B (p27, Kip1) CDKN1B 12p13.1-p12 BC001971.1 Hs.238990 46.0 Above 2
74 217707_x_at SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 SMARCA2 9p22.3 AI535683 Hs.198296 46.0 Above 2
75 221830_at Homo sapiens cDNA FLJ37267 fis, clone BRAMY2011297     AI302106 Hs.301746 46.0 Above 2
76 202761_s_at synaptic nuclei expressed gene 2 SYNE-2 14q23.1-q23.2 NM_015180.1 Hs.57749 45.9 Below 4
77 202976_s_at Rho-related BTB domain containing 3 RHOBTB3 5q21.2 NM_014899.1 Hs.10432 45.9 Above 12
78 213241_at plexin C1 PLXNC1   AF035307.1 Hs.184697 45.9 Above 3
79 230332_at ESTs     AA872187 Hs.33665 45.4 Above 3
80 209905_at hypothetical protein MGC1934 MGC1934 7p21.1 AI246769 Hs.127428 44.9 Above 31
81 226789_at ESTs, Weakly similar to A46506 leukocyte activation antigen M6 - human [H.sapiens]     W84421 Hs.356113 44.9 Above 2
82 204019_s_at likely ortholog of mouse Sh3 domain YSC-like 1 SH3YL1 2p25.2 NM_015677.1 Hs.25213 44.0 Above 2
83 201874_at hypothetical protein FLJ21047 FLJ21047 1q23.2 BF978611 Hs.14891 43.9 Above 2
84 238558_at ESTs     AI445833 Hs.282887 43.9 Above 4
85 235964_x_at SAM domain and HD domain 1 SAMHD1 20pter-q12 AA603344 Hs.23889 43.6 Above 3
86 219099_at chromosome 12 open reading frame 5 C12orf5 12p13.3 NM_020375.1 Hs.24792 43.3 Above 3
87 201064_s_at poly(A) binding protein, cytoplasmic 4 (inducible form) PABPC4 1p32-p36 NM_003819.2 Hs.169900 43.3 Above 2
88 206471_s_at plexin C1 PLXNC1 12q23.3 NM_005761.1 Hs.286229 43.3 Above 9
89 208717_at oxidase (cytochrome c) assembly 1-like OXA1L 14q11.2 BC001669.1 Hs.151134 43.3 Above 2
90 210594_x_at myelin protein zero-like 1 MPZL1 1q23.2 AF239756.1 Hs.287832 43.3 Above 5
91 221675_s_at choline phosphotransferase 1 CHPT1 12q AF195624.1 Hs.171889 43.3 Above 2
92 225810_at hypothetical protein FLJ20313 FLJ20313 15q12 AL572015 Hs.126721 43.3 Above 2
93 242260_at ESTs, Moderately similar to  cytokine receptor-like factor 2; cytokine receptor CRL2 precusor [Homo sapiens] [H.sapiens]     BG283790 Hs.214238 43.3 Above 10
94 224763_at ESTs     AL137450.1 Hs.374308 43.3 Above 2
95 227534_at ESTs, Highly similar to  RIKEN cDNA 1110018J18 [Mus musculus] [M.musculus]     AL535879 Hs.42311 43.3 Above 35
96 235529_x_at SAM domain and HD domain 1 SAMHD1 20pter-q12 BF437747 Hs.23889 43.3 Above 4
97 212588_at protein tyrosine phosphatase, receptor type, C PTPRC 1q31-q32 AI809341 Hs.170121 43.2 Above 2
98 233931_at Homo sapiens cDNA FLJ11919 fis, clone HEMBB1000274     AK021981.1 Hs.193525 43.2 Above 22
99 240666_at ESTs     AI732568 Hs.191453 43.2 Above 4
100 209167_at glycoprotein M6B GPM6B Xp22.2 AF016004.1 Hs.5422 43.0 Above 10

Section III continued...