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Cheng Cheng, PhD

Associate Member, St. Jude Faculty
Department of Biostatistics
St. Jude Children's Research Hospital

See Faculty Bio


Supplemental data

Reference Alignment of SNP Microarray Signals for Copy Number Analysis of Tumors.
Pounds S, Cheng C, Mullighan C, Raimondi SC, Shurtleff S, Downing JR.
Bioinformatics 2009 Feb 1;25(3):315-21. Epub 2008 Dec 3.

In vivo Response to Methotrexate forecasts Outcome of Acute Lymphoblastic Leukemia and has a Distinct Gene Expression Profile.
Michael J. Sorich, Nicolas Pottier, Deqing Pei, Wenjian Yang, Leo Kager, Gabriele Stocco, Cheng Cheng, John C. Panetta, Ching-Hon Pui, Mary V. Relling, Meyling H. Cheok, William E. Evans
PLoS Med. 2008 Apr 15;5(4):e83.

Identification of genes associated with chemotherapy cross-resistance and treatment response in childhood acute lymphoblastic leukemia.
Sanne Lugthart, Meyling H. Cheok, Monique L. den Boer, Wenjian Yang, Amy Holleman, Cheng Cheng, Ching-Hon Pui, Mary V. Relling, Gritta E. Janka-Schaub, Rob Pieters, William E. Evans

Globin lentiviral vector insertions can perturb the expression of endogenous genes in beta-thalassemic hematopoietic cells.
Hargrove PW, Kepes S, Hanawa H, Obenauer JC, Pei D, Cheng C, Gray JT, Neale G, Persons DA
Mol Ther. 2008 Mar;16(3):525-33. Epub 2008 Jan 15.

Robust Estimation of the False Discovery Rate.
Stan Pounds, Cheng Cheng
Bioinformatics. 2006 Aug 15;22(16):1979-87. Epub 2006 Jun 15.

Sample Size Determination for the False Discovery Rate.
Stan Pounds, Cheng Cheng
Bioinformatics. 2005 Dec 1;21(23):4263-71. Epub 2005 Oct 4. Erratum in: Bioinformatics. 2009 Mar 1;25(5):698-9.

Statistical Development and Evaluation of Gene Expression Data Filters.
Stan Pounds, Cheng Cheng
J Comput Biol. 2005 May;12(4):482-95. Review.

Gene Expression Profiling of Pediatric Acute Myelogenous Leukemia.
Mary E. Ross, Rami Mahfouz, Mihaela Onciu, Hsi-Che Liu, Xiadong Zhou, Guangchun Song, Shelia A. Shurtleff, Stanley Pounds, Cheng Cheng, Jing Ma, Raul C. Riberiro, Jeffrey E. Rubnitz, Kevin Girtman, W. Kent Williams, Susana C. Raimondi, Der-Chemg Liang, Lee-Yung Shih, Ching-Hon Pui & James R. Downing
Blood. 2004 Dec 1;104(12):3679-87.

Arf induces p53-dependent and independent anti-proliferative genes.
Mei-Ling Kuo, Eric J. Duncavage, Rose Mathew, Willem den Besten, Dequing Pei, Deanna Naeve, Tadashi Yamamoto, Cheng Cheng, Charles J. Sherr and Martine F. Roussel
Cancer Res. 2003 Mar 1;63(5):1046-53.

Gene-expression patterns in drug resistant acute lymphoblastic leukemia cells and response to treatment.
Amy Holleman, Meyling H. Cheok, Monique L. den Boer, Wenjian Yang, Anjo J.P. Veerman, Karin M. Kazemier, Deqing Pei, Cheng Cheng, Ching-Hon Pui, Mary V. Relling, Gritta E. Janka-Schaub, Rob Pieters, and William E. Evans
N Engl J Med. 2004 Aug 5;351(6):533-42.

Improving False Discovery Rate Estimation.
Stan Pounds, Cheng Cheng
Bioinformatics. 2004 Jul 22;20(11):1737-45. Epub 2004 Feb 26.

Treatment-specific Changes in Gene Expression Discriminate in vivo Drug response in Human Leukemia Cells.
Meyling H. Cheok, Wenjian Yang, Ching Hon Pui, James R. Downing, Cheng Cheng, Clayton W. Naeve, Mary V. Relling, William E. Evans
Nature Genetics 2003 Jun;34(2):231.

Pediatric Lymphoblastic Leukemia by Gene Expression Profiling.
Eng-Juh Yeoh, Mary E. Ross, Shelia A. Shurtleff, W. Kent Williams, Divyen Patel, Rami Mahfouz, Fred G. Behm, Susana C. Raimondi, Mary V. Relling, Anami Patel, Cheng Cheng, Dario Campana, Dawn Wilkins, Xiaodong Zhou, Jinyan Li, Huiqing Liu, Ching-Hon Pui, William E. Evans, Clayton Naeve, Limsoon Wong, James R. Downing
Cancer Cell 2002 Mar;1(2):109-10.